So Controller Mode turns itself on every time I launch the game even though when I go to the option it is shown as Off. I have to switch it On and then Off again to get the controller icons to go away.
I do have a 360 controller connected to my PC, but why would I handicap myself by using it? Also, I had to turn Vibration off because even though Controller Mode was set to Off, my controller was dancing across my desk whenever I tried playing. So yea. Just some minor annoyances.